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| Major Sequence Repositories: |
DDBJ: DNA databank of Japan
EMBL: Maintained
by EMBL
GenBank: Maintained
by NCBI
| Human Chromosome Information: |
Click the link below to access chromosome information
| Organelle Genome
Databases: |
OGMP: Organell
genome megasequencing program
GOBASE:
An organelle genome database
MitoMap: Human mitochondrial
genome database
Rfam: RNA familiy database
RNA base:
Database of RNA structures
tRNA database: Database of
tRNAs
tRNA:
tRNA sequences and genes
sRNA: Small
RNA database
| Comparative & Phylogenetic Databases: |
COG: Phylogenetic
classification of proteins
DHMHD: Human-mouse
homology database
HomoloGene: Gene
homologies across species
Homophila:
Human disease to Drosophila gene database
HOVERGEN:
Database of homologous vertebrate genes
TreeBase: A
database of phylogenetic knowledge
XREF:
Cross-referencing with model organisms
| SNPs, Mutations
& Variations Databases: |
ALPSbase: Database of mutations
causing human ALPS
dbSNP: Single nucleotide
polymorphism database at NCBI
HGVbase: Human Genome Variation
database
| Alternative Splicing
Databases: |
ASAP:
Alternate splicing analysis tool at UCLA
ASG: Alternate
splicing gallery
HASDB: Human
alternative splicing database at UCLA
AsMamDB:
alternatively spliced genes in human, mouse and rat
ASD: Alternative
splicing database at CSHL |
ABIM: Links to several genomics database
ACUTS: Ancient
conserved untranslated sequences
AGSD: Animal genome size database
AmiGO: The Gene Ontology
database
ARGH: The acronym database
ASDB: Database of alternatively spliced genes
BACPAC: BAC and PAC genomic
DNA library info
BBID: Biological
Biochemical image database
Cardiac gene database:
CHLC: Genetic markers on chromosomes
COGENT: Complete
genome tracking database
COMPEL: Composite regulatory elements
in eukaryotes
CUTG: Codon usage database
dbEST:
Database of expressed sequences or mRNA
dbGSS: Genome
survey sequence database
dbSTS: Sequence
tagged sites (STS)
DBTSS: Database of transcriptional
start sites
DOGS: Database of
genome sizes
EID: The exon-intron
database - Harvard
Exon-Intron:
Exon-Intron database - Singapore
EPD: Eukaryotic promotor database
FlyTrap: HTML based gene expression
database
GDB: The genome database
GenLink: Resources for human
genetic and telomere research
GeneKnockouts:
Gene knockout information
GENOTK: Human cDNA database
GEO: Gene expression omnibus
NCBI
GOLD: Information
on genome projects around the world
GSDB:The
Genome Sequence DataBase
HGI: TIGR human
gene index
HTGS: High-through-put
genomic sequence at NCBI
IMAGE: The largest collection
of DNA sequences clones
IMGT: The
international ImMunoGeneTics information system
IPCN: Index
to Plant Chromosome Numbers database
LocusLink: Single
query interface to sequence and genetic loci
TelDB: The
telomere database
MitoDat: Mitochondrial
nuclear genes
Mouse EST:
NIA mouse cDNA project
MPSS: Searchable
databases of several species
NDB: Nucleic acid database
NEDO: Human cDNA sequence
database
NPD: Nuclear
protein database
Oomycetes
DB: Oomycetes database at Virginia Bioinformatics Institute
PLACE: Database of plant
cis-acting regulatory DNA elements
RDP: Ribosomal
database project
RDB: Receptor database
at NIHS, Japan
Refseq: The NCBI reference
sequence project
RHdb: Radiation hybrid
physical map of chromosomes
SHIGAN: SHared Information of GENetic
resources, Japan
SpliceDB:
Canonical and non-canonical splice site sequences
STACK: Consensus human
EST database
TAED: The adaptive
evolution database
TIGR: Curated
databases of microbes, plants and humans
TRANSFAC: The Transcription
Factor Database
TRRD: Transcription
Regulatory region database
UniGene: Cluster
of sequences for unique genes at NCBI
UniSTS: Nonredundent
collection of STS
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