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| Major Sequence Repositories: |
DDBJ: DNA databank
of Japan
EMBL:
Maintained
by EMBL
GenBank:
Maintained by NCBI
| Human Chromosome Information: |
Click the link below to access chromosome information
| Organelle Genome
Databases: |
OGMP:
Organell genome megasequencing program
GOBASE:
An organelle genome database
MitoMap: Human
mitochondrial genome database
Rfam: RNA familiy
database
RNA base:
Database of RNA structures
tRNA
database: Database
of tRNAs
tRNA:
tRNA sequences and genes
sRNA:
Small RNA database
| Comparative & Phylogenetic Databases: |
COG:
Phylogenetic classification of proteins
DHMHD:
Human-mouse homology database
HomoloGene:
Gene homologies across species
Homophila:
Human disease to Drosophila gene
database
HOVERGEN:
Database of homologous vertebrate genes
TreeBase:
A
database of phylogenetic knowledge
XREF:
Cross-referencing with model organisms
| SNPs, Mutations
& Variations Databases: |
ALPSbase: Database of
mutations causing human ALPS
dbSNP: Single
nucleotide polymorphism database at NCBI
HGVbase: Human Genome
Variation database
| Alternative
Splicing Databases: |
ASAP:
Alternate splicing analysis tool at UCLA
ASG:
Alternate splicing gallery
HASDB:
Human alternative splicing database at UCLA
AsMamDB:
alternatively spliced genes in human, mouse and rat
ASD:
Alternative
splicing database at CSHL |
ABIM: Links to several genomics database
ACUTS:
Ancient conserved untranslated sequences
AGSD: Animal genome size database
AmiGO: The Gene
Ontology database
ARGH: The acronym database
ASDB: Database of alternatively spliced genes
BACPAC: BAC and PAC
genomic DNA library info
BBID:
Biological Biochemical image database
Cardiac gene
database:
CHLC: Genetic markers on
chromosomes
COGENT:
Complete genome tracking database
COMPEL: Composite regulatory
elements in eukaryotes
CUTG: Codon usage
database
dbEST:
Database of expressed sequences or mRNA
dbGSS:
Genome survey sequence database
dbSTS:
Sequence tagged sites (STS)
DBTSS: Database of
transcriptional start sites
DOGS: Database
of genome sizes
EID: The
exon-intron database - Harvard
Exon-Intron:
Exon-Intron database - Singapore
EPD: Eukaryotic promotor
database
FlyTrap: HTML based gene
expression
database
GDB: The genome database
GenLink: Resources for
human genetic and telomere research
GeneKnockouts:
Gene knockout information
GENOTK: Human cDNA
database
GEO: Gene expression
omnibus NCBI
GOLD:
Information on genome projects around the world
GSDB:The
Genome Sequence DataBase
HGI: TIGR
human
gene index
HTGS:
High-through-put genomic sequence at NCBI
IMAGE: The largest collection
of DNA sequences clones
IMGT: The
international ImMunoGeneTics information system
IPCN:
Index to Plant Chromosome Numbers database
LocusLink:
Single query interface to sequence and genetic loci
TelDB:
The telomere database
MitoDat:
Mitochondrial nuclear genes
Mouse
EST:
NIA mouse cDNA project
MPSS:
Searchable databases of several species
NDB: Nucleic acid
database
NEDO: Human cDNA
sequence database
NPD: Nuclear
protein database
Oomycetes
DB:
Oomycetes database at Virginia Bioinformatics Institute
PLACE: Database of
plant cis-acting regulatory DNA elements
RDP:
Ribosomal database project
RDB: Receptor
database at NIHS, Japan
Refseq: The NCBI
reference
sequence project
RHdb: Radiation
hybrid physical map of chromosomes
SHIGAN: SHared Information of
GENetic resources, Japan
SpliceDB:
Canonical and non-canonical splice site sequences
STACK: Consensus
human EST database
TAED: The
adaptive evolution database
TIGR:
Curated databases of microbes, plants and humans
TRANSFAC: The
Transcription Factor Database
TRRD:
Transcription Regulatory region database
UniGene:
Cluster of sequences for unique genes at NCBI
UniSTS:
Nonredundent collection of STS
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