Microarrays, DNA Chips & Differential Displays

Microarray Data Standards GEO Gene expression omnibus at NCBI MAGE MicroArray and Gene Expression MGED Microarray gene expression database group MIAME Minimum information about a microarray experiment Gene Expression Databases: ArrayExpress Microarray based gene expression data at EBI AREX The Arabidopsis expression database Body Map Human and mouse expression database Cardiovascular The Cardiac Genes Database EpoDB Genes related to vertebrate red blood cells ExpressDB Yeast RNA expression data Fly-Trap Fruit fly brain gene expressiond atabase GEO Public gene expression data from various platforms at NCBI GXD Gene expression database of mouse HLA-I HLA class I information at Washington university Microarray Links Gene expression and microarray related links MIRAGE Molecular informatics resource for the analysis of gene expression Module Map Conditional activity of expression modules in cancer Oncomine Cancer microarray database PEDB Prostate expression database RAD RNA abundance database RegulonDB Database on transcription regulation in E Coli SarcoGene Skeletal muscle gene expression database Stem Cells Stem cell database Tooth Development Gene expression during tooth development Pancreas Endocrine pancreas consortium  Microarray Projects: AECOM Chip based functional genomics studies Bibliography Bibliography on microarry data analysis ChipDB Database of gene expression at MIT DNA Microarray An excellent site for DNA microarray related information EBI Microarray informatics at EBI ENS, France Microarrays EPAMAC U.S. Environment Protection Agency microarray consortium GridIt Resources for microarrays mAdb at NCI Mad bee project at NCI MAP The microarray project at NHGRI PaGE Patterns of gene expression at UPENN SMD Stanford microarray database Microarrays.org A public source for microarray protocols and software at UCSF NCI60 NCI60 cancer microarray project NIEHS NIEHS cDNA microarray group MAXD Data warehouse and visualisation for microarray data at Manchester Microarray data Pat Brown lab at Stanford NIEHS NIEHS microarray center OCI Ontario cancer institute microarray center Yale The Keck DNA Microarray Resource at Yale Other Differential Display Methods: SAGE Serial analysis of gene expression at NIH SAGE Net Extensive SAGE related information SADE A SAGE adaptation for down sized extracts RAGE Rapid analysis of gene expression at M.D. Anderson cancer center Tissue Specific Expression Databases CellProbDB Information about membrane channels, receptor and neurotransmitters EpoDB Erythropoiesis database at UPENN MGAP Mammary Genome Anatomy Project NeuronDB Database of voltage gated conductance's, neurotransmitter substances and receptor Companies & Businesses page for commercial packages for data analysis and visulization tools Go to Analysis page to find many good utilities BRB Array Tools Free analysis software from NCI Eisen Lab at LBNL Sveral analysis tools available TIGR Several tools from TIGR XCluster Clustering tool from Stanford UnCHIP Program to convert Affymetrix probe set ProbeExplorer Association analysis between microarray oligonucleotide probes and transcripts in genomic context Microarray Related Links BioChipNet The informational web site on biochip technologies Horizon Press Microarray information Microarray Links Susanna Sansones page

 
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