123 Genomics - Gene Expression, Microarrays, DNA chips andDifferential Displays

123 Genomics - Gene Expression, Microarrays, DNA chips and Differential Displays

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Microarrays, DNA Chips & Differential Displays

Microarray Data Standards
GEO	Gene expression omnibus at NCBI
MGED	Microarray gene expression database group
MIAME	Minimum information about a microarray experiment

Gene Expression Databases:
ArrayExpress	Microarray based gene expression data at EBI
AREX	The Arabidopsis expression database
Body Map	Human and mouse expression database
Cardiovascular	The Cardiac Genes Database
EpoDB	Genes related to vertebrate red blood cells
ExpressDB	Yeast RNA expression data
Fly-Trap	Fruit fly brain gene expressiond atabase
GEO	Public gene expression data from various platforms at NCBI
GXD	Gene expression database of mouse
HLA-I	HLA class I information at Washington university
Microarray Links	Gene expression and microarray related links
MIRAGE	Molecular informatics resource for the analysis of gene expression
Module Map	Conditional activity of expression modules in cancer
Oncomine	Cancer microarray database
PEDB	Prostate expression database
RAD	RNA abundance database
RegulonDB	Database on transcription regulation in E Coli

Stem Cells	Stem cell database
Tooth Development	Gene expression during tooth development
Pancreas	Endocrine pancreas consortium

Microarray Projects:

Bibliography	Bibliography on microarry data analysis


EBI	Microarray informatics at EBI
ENS, France	Microarrays
EPAMAC	U.S. Environment Protection Agency microarray consortium
GridIt	Resources for microarrays
mAdb at NCI	Mad bee project at NCI
MAP	The microarray project at NHGRI
PaGE	Patterns of gene expression at UPENN

Microarrays.org	A public source for microarray protocols and software at UCSF
NCI60	NCI60 cancer microarray project
NIEHS	NIEHS cDNA microarray group
MAXD	Data warehouse and visualisation for microarray data at Manchester
Microarray data	Pat Brown lab at Stanford
NIEHS	NIEHS microarray center
OCI	Ontario cancer institute microarray center
Yale	The Keck DNA Microarray Resource at Yale

Other Differential Display Methods:
SAGE	Serial analysis of gene expression at NIH
SAGE Net	Extensive SAGE related information

RAGE	Rapid analysis of gene expression at M.D. Anderson cancer center

Tissue Specific Expression Databases



Companies & Businesses page for commercial packages for data analysis and visulization tools Go to Analysis page to find many good utilities
BRB Array Tools	Free analysis software from NCI
Eisen Lab at LBNL	Sveral analysis tools available

XCluster	Clustering tool from Stanford

Horizon Press	Microarray information